Can I use NuGet for JavaScript libraries without putting them in the top-level Scripts folder?

I'd love to use NuGet for jQuery, jQuery UI, Modernizr, Knockout.js, and more. But NuGet wants to put the associated files in /Scripts, which would get way too messy. I'd much prefer them to go into /Content/Scripts/libraries, or at the very least /Scripts/libraries.

Is this possible?