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Я нашел реализацию подсчета бит в массиве с использованием команды SIMD (SSSE3 и AVX2).

Версия SSSE3:

#include <smmintrin.h>
#include <stdint.h>

const __m128i Z = _mm_set1_epi8(0x0);
const __m128i F = _mm_set1_epi8(0xF);
//Vector with pre-calculated bit count:
const __m128i T = _mm_setr_epi8(0, 1, 1, 2, 1, 2, 2, 3, 1, 2, 2, 3, 2, 3, 3, 4);

uint64_t BitCount(const uint8_t * src, size_t size)
{
    __m128i _sum =  _mm128_setzero_si128();
    for (size_t i = 0; i < size; i += 16)
    {
        //load 16-byte vector
        __m128i _src = _mm_loadu_si128((__m128i*)(src + i));
        //get low 4 bit for every byte in vector
        __m128i lo = _mm_and_si128(_src, F);
        //sum precalculated value from T
        _sum = _mm_add_epi64(_sum, _mm_sad_epu8(Z, _mm_shuffle_epi8(T, lo)));
        //get high 4 bit for every byte in vector
        __m128i hi = _mm_and_si128(_mm_srli_epi16(_src, 4), F);
        //sum precalculated value from T
        _sum = _mm_add_epi64(_sum, _mm_sad_epu8(Z, _mm_shuffle_epi8(T, hi)));
    }
    uint64_t sum[2];
    _mm_storeu_si128((__m128i*)sum, _sum);
    return sum[0] + sum[1];
}

Версия AVX2:

#include <immintrin.h>
#include <stdint.h>

const __m256i Z = _mm256_set1_epi8(0x0);
const __m256i F = _mm256_set1_epi8(0xF);
//Vector with pre-calculated bit count:
const __m256i T = _mm256_setr_epi8(0, 1, 1, 2, 1, 2, 2, 3, 1, 2, 2, 3, 2, 3, 3, 4, 
                                   0, 1, 1, 2, 1, 2, 2, 3, 1, 2, 2, 3, 2, 3, 3, 4);

uint64_t BitCount(const uint8_t * src, size_t size)
{
    __m256i _sum =  _mm256_setzero_si256();
    for (size_t i = 0; i < size; i += 32)
    {
        //load 32-byte vector
        __m256i _src = _mm256_loadu_si256((__m256i*)(src + i));
        //get low 4 bit for every byte in vector
        __m256i lo = _mm256_and_si256(_src, F);
        //sum precalculated value from T
        _sum = _mm256_add_epi64(_sum, _mm256_sad_epu8(Z, _mm256_shuffle_epi8(T, lo)));
        //get high 4 bit for every byte in vector
        __m256i hi = _mm256_and_si256(_mm256_srli_epi16(_src, 4), F);
        //sum precalculated value from T
        _sum = _mm256_add_epi64(_sum, _mm256_sad_epu8(Z, _mm256_shuffle_epi8(T, hi)));
    }
    uint64_t sum[4];
    _mm256_storeu_si256((__m256i*)sum, _sum);
    return sum[0] + sum[1] + sum[2] + sum[3];
}