Post-hoc pairwise fisher exact test

I used to have 2 factor by 2 level experiment that got made into a 3 factor by 2 level experiment.

By using paste I could make 4 unique groups from my two factors and run a Fisher test with the outcome being whether an organism lived or died.

fisher.test(mortal$alv.dead,paste(mortal$Strain,mortal$capsule))

But then when I wanted to investigate pairwise comparisons between the individual groups I had to make some inelegant filtering so that only two groups entered the analysis at a time. Now that I have more groups it is too tedious to hand code each paring. So here is the Fisher test to test all the groups in one analysis

fisher.test(mortal$alv.dead,paste(mortal$Strain,mortal$capsule,mortal$cassette))

How do I set up a method that creates and tests all possible pairings?

1
задан Brian Tompsett - 汤莱恩 13 February 2019 в 20:43
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