Определение зон перекрытия в растровом пакете R

Package:

Data:

  • A rasterStack with 10 bands.
  • Each of the bands contains an image area surrounded by NAs
  • Bands are logical, i.e. "1" for image data and "0"/NA for surrounding area
  • The "image areas" of each band do not align completely with each other, though most have partial overlaps

Objective:

  • Write a fast function that can return either a rasterLayer or cell numbers for each "zone", for instance a pixel containing data only from bands 1 and 2 falls in zone 1, a pixel containing data only from bands 3 and 4 falls in zone 2, etc. If a rasterLayer is returned, I need to be able to match the zone value with band numbers later.

First attempt:

# Possible band combinations
values = integer(0)
for(i in 1:nlayers(myraster)){
 combs = combn(1:nlayers(myraster), i)
 for(j in 1:ncol(combs)){
  values = c(values, list(combs[,j]))
 }
}

# Define the zone finding function
find_zones = function(bands){

 # The intersection of the bands of interest
 a = subset(myraster, 1)
 values(a) = TRUE
 for(i in bands){
  a = a & myraster[[i]]
 }

 # Union of the remaining bands
 b = subset(myraster, 1)
 values(b) = FALSE
 for(i in seq(1:nlayers(myraster))[-bands]){
  b = b | myraster[[i]]
 }

 #plot(a & !b)
 cells = Which(a & !b, cells=TRUE)
 return(cells)
}

# Applying the function
results = lapply(values, find_zones)

My current function takes a very long time to execute. Can you think of a better way? Note that I don't simply want to know how many bands have data at each pixel, I also need to know which bands. The purpose of this is to process different the areas differently afterwards.

Note also that the real-life scenario is a 3000 x 3000 or more raster with potentially more than 10 bands.


EDIT

Some sample data consisting of 10 offset image areas:

# Sample data
library(raster)    
for(i in 1:10) {
  start_line = i*10*1000
  end_line = 1000000 - 800*1000 - start_line
  offset = i * 10
  data = c(rep(0,start_line), rep(c(rep(0,offset), rep(1,800), rep(0,200-offset)), 800), rep(0, end_line))
  current_layer = raster(nrows=1000, ncols=1000)
  values(current_layer) = data
  if(i == 1) {
    myraster = stack(current_layer)
  } else {
    myraster = addLayer(myraster, current_layer)
  }
}
NAvalue(myraster) = 0  # You may not want to do this depending on your solution...

Showing what the sample data looks like

8
задан Benjamin 18 April 2011 в 13:02
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